Basically the nofollow function is intended to avoid duplicate content (i.e. if the same posts are indexed because of the blog, mainpage and archives). If your side structure is based on categories you can remove the no-follow meta tag by deleteting following code in header.php:
if (function_exists('khelper_follow_nofollow')) khelper_follow_nofollow();
// outputs a rel=follow or nofollow tag to circumvent google duplicate content for archives
// located in framework/helper_functions/lots_of_small_helpers.php
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